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A New Clue to How Life Originated

The Atlantic logoThe Atlantic 12/08/2019 Ed Yong
a star in the background: A cell © Juhari Muhade / Getty A cell

When Caitlin Cornell looked down her microscope, she saw large bright spots against a black background. They resembled miniatures suns, blazing against the backdrop of space. And when Cornell showed the spots to her supervisor, Sarah Keller, a chemist at the University of Washington, “we got really excited,” she recalls. “It was a bit of an ‘Aha!’ moment.” Those spots, she realized, might help address a long-standing puzzle about the origin of life itself.

The cells that make up all living things, despite their endless variations, contain three fundamental elements. There are molecules that encode information and can be copied—DNA and its simpler relative, RNA. There are proteins—workhorse molecules that perform important tasks. And encapsulating them all, there’s a membrane made from fatty acids. Go back far enough in time, before animals and plants and even bacteria existed, and you’d find that the precursor of all life—what scientists call a “protocell”—likely had this same trinity of parts: RNA and proteins, in a membrane. As the physicist Freeman Dyson once said, “Life began with little bags of garbage.”

3-D MODEL -- 02/04/2001 -- Section of human DNA model. JIM RANKIN/TORONTO STAR (Photo by Jim Rankin/Toronto Star via Getty Images) 3-D MODEL -- 02/04/2001 -- Section of human DNA model. JIM RANKIN/TORONTO STAR (Photo by Jim Rankin/Toronto Star via Getty Images)

The bags—the membranes—were crucial. Without something to corral the other molecules, they would all just float away, diffusing into the world and achieving nothing. By concentrating them, membranes transformed an inanimate world of disordered chemicals into one teeming with redwoods and redstarts, elephants and E. coli, humans and hagfish. Life, at its core, is about creating compartments. And that’s much easier and much harder than it might seem.

First, the easy bit. Early cell membranes were built from fatty acids—molecules that look like lollipops, with round heads and long tails. The heads enjoy the company of water; the tails despise it. So, when placed in water, fatty acids self-assemble into hollow spheres, with the water-hating tails pointing inward and the water-loving heads on the surface. These spheres can enclose RNA and proteins, making protocells. Fatty acids, then, can automatically create the compartments that were necessary for life to emerge. It almost seems too good to be true.

A scientific researcher extracts the RNA from embryonic stem cells in a laboratory, at the Univestiry of Sao Paulo's human genome research center, in Sao Paulo, Brazil, on March 4, 2008. Brazil's Federal Supreme Court will decide tomorrow on the continuity of the embryonic stem cells research, after Roman Catholich church officials and anti-abortion groups urged to ban it, as the stem cells extraction entails the destruction of the embryo.  AFP PHOTO/Mauricio LIMA (Photo credit should read MAURICIO LIMA/AFP/Getty Images) © 2008 AFP A scientific researcher extracts the RNA from embryonic stem cells in a laboratory, at the Univestiry of Sao Paulo's human genome research center, in Sao Paulo, Brazil, on March 4, 2008. Brazil's Federal Supreme Court will decide tomorrow on the continuity of the embryonic stem cells research, after Roman Catholich church officials and anti-abortion groups urged to ban it, as the stem cells extraction entails the destruction of the embryo. AFP PHOTO/Mauricio LIMA (Photo credit should read MAURICIO LIMA/AFP/Getty Images)

And it is, for two reasons. Life first arose in salty oceans, and salt catastrophically destabilizes the fatty-acid spheres. Also, certain ions, including magnesium and iron, cause the spheres to collapse, which is problematic since RNA—another key component of early protocells—requires these ions. How, then, could life possibly have arisen, when the compartments it needs are destroyed by the conditions in which it first emerged, and by the very ingredients it needs to thrive?

Caitlin Cornell and Sarah Keller have an answer to this paradox. They’ve shown that the spheres can withstand both salt and magnesium ions, as long as they’re in the presence of amino acids—the simple molecules that are the building blocks of proteins. The little suns that Cornell saw under her microscope were mixtures of amino acids and fatty acids, holding their spherical shape in the presence of salt.

Biologists work on the research of DNA from embryonic stem cells, in a laboratory at 'Hospital do Coracao' heart institute, in Sao Paulo, Brazil, on March 5, 2008. Brazil's Federal Supreme Court will decide today on the continuity of the stem cells research, after Roman Catholich church officials and anti-abortion groups urged to ban it, given that the stem cells extraction entails the destruction of the embryo. AFP PHOTO/Mauricio LIMA        (Photo credit should read MAURICIO LIMA/AFP/Getty Images) © 2012 AFP Biologists work on the research of DNA from embryonic stem cells, in a laboratory at 'Hospital do Coracao' heart institute, in Sao Paulo, Brazil, on March 5, 2008. Brazil's Federal Supreme Court will decide today on the continuity of the stem cells research, after Roman Catholich church officials and anti-abortion groups urged to ban it, given that the stem cells extraction entails the destruction of the embryo. AFP PHOTO/Mauricio LIMA (Photo credit should read MAURICIO LIMA/AFP/Getty Images) I find that utterly magical. It means that two of the essential components of life, a protocell’s membrane and its proteins, provided the conditions for each other to exist. By sticking to the fatty acids, the amino acids gave them stability. In turn, the fatty acids concentrated the amino acids, perhaps encouraging them to coalesce into proteins. From the very beginning, these partners were locked in a two-step dance that continued for 3.5 billion years, and helped create all the richness of biology from a starting place of mere chemistry. “I agree completely,” Keller tells me. “It’s completely magical. You need those two parts together.”

“It’s fantastic work,” says Neal Devaraj, of UC San Diego. “Their suggestion that membranes could promote the synthesis of [proteins] is really fascinating.”

This discovery happened almost by accident. Originally, Keller set out to address a different problem, posed to her by her colleague Roy Black. He noted that no one had good ideas about how exactly the protocell trinity—RNA, proteins, and membranes—actually assembled in the first place. It seemed that people were just waving their hands and attributing this crucial convergence to some random event. Black, instead, suggested that the membranes themselves were key. If fatty acids can stick to the constituents of both proteins and RNA, they could have gathered these building blocks together as they themselves assembled.

A display of skulls demonstrating human evolution.  (Photo by Fritz Goro/The LIFE Picture Collection/Getty Images) © Time Life Pictures A display of skulls demonstrating human evolution. (Photo by Fritz Goro/The LIFE Picture Collection/Getty Images) Cornell tested that idea by incubating a fatty acid with three different amino acids, all of which are thought to have existed on the primordial Earth. Sure enough, as Black had suspected, the molecules interacted with one another. But when she looked under the microscope, Cornell realized something special was happening.

On their own, the fatty acids predictably self-assembled into hollow spheres. “They looked like jellyfish: clear insides with opaque edges, floating around,” she says. If she added salt or magnesium ions, these jellyfish disintegrated. But if she did that after adding amino acids, they held their shape. What’s more, they transformed into shapes that Cornell likens to glowing onions. Their once-hollow centers were filled with another layer of fatty acids—spheres within spheres. Not coincidentally, that’s what our actual cells are like, with membranes that comprise two fatty layers instead of one.

A scientific researcher manipulates drops of embryonic stem cells in a laboratory, at 'Hospital do Coracao' heart institute, in Sao Paulo, Brazil, on 5 March, 2008. Brazil's Federal Supreme Court will decide today on the continuity of the stem cells research, after Roman Catholich church officials and anti-abortion groups urged to ban it, given that the stem cells extraction entails the destruction of the embryo. AFP PHOTO/Mauricio LIMA (Photo credit should read MAURICIO LIMA/AFP/Getty Images) © 2008 AFP A scientific researcher manipulates drops of embryonic stem cells in a laboratory, at 'Hospital do Coracao' heart institute, in Sao Paulo, Brazil, on 5 March, 2008. Brazil's Federal Supreme Court will decide today on the continuity of the stem cells research, after Roman Catholich church officials and anti-abortion groups urged to ban it, given that the stem cells extraction entails the destruction of the embryo. AFP PHOTO/Mauricio LIMA (Photo credit should read MAURICIO LIMA/AFP/Getty Images) So, the presence of amino acids not only protects the fatty-acid spheres, but also turns them into something more obviously biological. Why? “We have no idea, and we wouldn’t have predicted it,” Keller says, laughing. “We’re in a lovely place that opens the field up to future theory.”

“This is great work,” says Kate Adamala of the University of Minnesota. Other studies, she notes, have found interactions between any two of amino acids, fatty-acid membranes, and RNA, but Cornell and Keller’s study effectively ties all three together. Amino acids allow membranes to exist in the presence of magnesium, which RNA needs to function.

The reconstruction of a Homo neanderthalensis, who lived within Eurasia from circa 400,000 until 40,000 years ago, mirrors at the Neanderthal Museum in Mettmann, Germany, located at the site of the first Neanderthal man discovery, Wednesday, July 3, 2019. The museum features an exhibition centered on human evolution. (AP Photo/Martin Meissner) © ASSOCIATED PRESS The reconstruction of a Homo neanderthalensis, who lived within Eurasia from circa 400,000 until 40,000 years ago, mirrors at the Neanderthal Museum in Mettmann, Germany, located at the site of the first Neanderthal man discovery, Wednesday, July 3, 2019. The museum features an exhibition centered on human evolution. (AP Photo/Martin Meissner) The study of life’s origins is always contentious. Scientists often disagree furiously about things that are happening right now, let alone events that occurred more than 3.5 billion years ago. Some researchers, for example, think that life began in shallow volcanic pools, while others argue that it must have arisen in underwater vents. Keller’s ideas, mercifully, work in both environments. “I’m agnostic,” she says. “I’m excited that [our study] makes the idea of protocells more plausible independent of the location.”

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She’s now looking into what happens after the protocells assemble. Sure, there’s a compartment that contains the building blocks for making proteins and RNA. “But how do those individual building blocks bond to form the larger molecules?” she says. “It’s a very hard question.”

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